Find all hotels by Independent in Boothbay Harbor, ME from $82
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Compare rooms and suites by Independent in Boothbay Harbor with rates, reviews, and availability. Most hotels are fully refundable.

Travelers Inn
Travelers Inn
9.0 out of 10, Wonderful, (1003)
The price is $88
includes taxes & fees
$81 per night
Apr 27 - Apr 28

The Federal
The Federal
9.6 out of 10, Exceptional, (452)
The price is $157
includes taxes & fees
$144 per night
Apr 27 - Apr 28

Tugboat Inn
Tugboat Inn
9.0 out of 10, Wonderful, (1000)
The price is $158
includes taxes & fees
$145 per night
May 1 - May 2

The Brunswick Hotel
The Brunswick Hotel
9.2 out of 10, Wonderful, (782)
The price is $228
includes taxes & fees
$209 per night
May 18 - May 19

OneSixtyFive
OneSixtyFive
9.4 out of 10, Exceptional, (120)
The price is $206
includes taxes & fees
$189 per night
Apr 27 - Apr 28

Smuggler's Cove Inn
Smuggler's Cove Inn
9.0 out of 10, Wonderful, (357)
The price is $205
includes taxes & fees
$188 per night
May 8 - May 9

Flagship Inn and Suites
Flagship Inn and Suites
8.2 out of 10, Very Good, (1003)
The price is $138
includes taxes & fees
$127 per night
Apr 28 - Apr 29

Fishermans Wharf Inn
Fishermans Wharf Inn
8.6 out of 10, Excellent, (734)
The price is $174
includes taxes & fees
$160 per night
May 22 - May 23
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Find out more about Boothbay Harbor
Find out more about Boothbay Harbor
Independent Boothbay Harbor Hotel Guide
Some globe-trotters choose hotels based on location, but others book by name. And thanks to Expedia you don’t have to pick. It is why we offer such an expansive range of Independent hotels in Boothbay Harbor, Maine. Known for well-appointed rooms and friendly, personalized service, each of the top Independent Boothbay Harbor hotels guarantees an unparalleled level of comfort and quality.
You’ll find best-in-class amenities like clean rooms and quiet atmospheres, and some Boothbay Harbor Independent locations may even offer extra little benefits and discounts for frequent travelers.
Recent reviews of Boothbay Harbor hotels
Recent reviews of Boothbay Harbor hotels

Flagship Inn and Suites
5/5 Excellent
"Very nice hotel! Clean room too. Staff was very friendly and funny. Made us feel welcome. "
A verified traveler from Tunnel Hill stayed at Flagship Inn and Suites
Posted 3 weeks ago
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Lodging
- Hotels near Boothbay Harbor Memorial Library
- Hotels near Boothbay Harbor Marina
- Hotels near Burnt Island Living Lighthouse
- Hotels near Opera House at Boothbay Harbor
- Hotels near Boothbay Region Historical Society Museum
- Hotels near Boothbay Region Land Trust
- Hotels near Fisherman's Memorial Park
- Hotels near Barrett Park
- Hotels near Carousel Music Theater
- Hotels near Maine State Aquarium
- Hilton Hotels in Boothbay
- Hotels near Cabbage Island
- Hotels near Boothbay Farmers' Market
- Boothbay Hotels
- Cabin Rentals in Boothbay
- Luxury Hotels in Boothbay
- Extended Stay Hotels in Boothbay
- Motels in Boothbay
- Hotels with Free Parking in Boothbay
- 4 Star Hotels in Boothbay
- Houseboats in Boothbay
- Condo Rentals in Boothbay
- Cottages in Boothbay
- Vacation Homes in Boothbay
- Resorts in Boothbay
- B&B in Boothbay
- Cheap Hotels in Boothbay
- Historic Hotels in Boothbay
- Lodges in Boothbay
- Southport Hotels
- Romantic Hotels in Southport
- Condo Rentals in Southport
- Apartments in Southport
- Pet-friendly Hotels in Southport
- Hotel Wedding Venues Hotels in Southport
- Historic Hotels in Southport
- Motels in Southport
- B&B in Southport
- Cottages in Southport
- Luxury Hotels in Southport
- Guest Houses in Southport
- Hotels with Restaurants in Southport
- Hotels with Free Breakfast in Southport
- Cabin Rentals in Southport
- Resorts & Hotels with Spas in Southport
- Hotels near Boothbay Golf Course
- West Boothbay Harbor Hotels
- Hotels near Coastal Maine Botanical Gardens
- East Boothbay Hotels
- Cottages in East Boothbay
- Extended Stay Hotels in East Boothbay
- Resorts in East Boothbay
- B&B in East Boothbay
- Beach Hotels in East Boothbay
- Hotels with Fireplaces in East Boothbay
- Motels in East Boothbay
- Cabin Rentals in East Boothbay
- Apartments in East Boothbay
- Hotels with Laundry Facilities in East Boothbay
- Cabin Rentals in Squirrel Island
- Squirrel Island Hotels
- 4 Star Hotels in Squirrel Island
- Cottages in Squirrel Island
- Vacation Homes in Squirrel Island
Packages
- Boothbay Harbor Marina
- Burnt Island Living Lighthouse
- Opera House at Boothbay Harbor
- Boothbay Region Historical Society Museum
- Boothbay Region Land Trust
- Fisherman's Memorial Park
- Barrett Park
- Carousel Music Theater
- Maine State Aquarium
- Cabbage Island
- Juniper Point
- Visit Southport
- Visit Boothbay
- Boothbay Vacations
- Visit East Boothbay
- Coastal Maine Botanical Gardens
- East Boothbay Vacations
- Visit Squirrel Island
- Squirrel Island Vacations
Cars
- Car rentals near Maine State Aquarium
- Car rentals near Bayville
- Avis Rental Cars in Boothbay
- Hertz Rental Cars in Boothbay
- Car rentals near Boothbay
- Car rentals near Southport
- Car rentals near West Boothbay Harbor
- Pickup Car Rentals near Coastal Maine Botanical Gardens
- Car rentals near East Boothbay
- Car rentals near Squirrel Island