Find all hotels by Independent in Boothbay Harbor, ME from $81
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Compare rooms and suites by Independent in Boothbay Harbor with rates, reviews, and availability. Most hotels are fully refundable.

Travelers Inn
Travelers Inn
8.8 out of 10, Excellent, (1109)
The price is $81
includes taxes & fees
$74 per night
Apr 6 - Apr 7

The Federal
The Federal
9.6 out of 10, Exceptional, (445)
The price is $147
includes taxes & fees
$135 per night
Apr 6 - Apr 7

Tugboat Inn
Tugboat Inn
9.0 out of 10, Wonderful, (1128)

The Brunswick Hotel
The Brunswick Hotel
9.2 out of 10, Wonderful, (781)

OneSixtyFive
OneSixtyFive
9.4 out of 10, Exceptional, (115)
The price is $184
includes taxes & fees
$169 per night
Mar 31 - Apr 1

Smuggler's Cove Inn
Smuggler's Cove Inn
9.0 out of 10, Wonderful, (357)

Flagship Inn and Suites
Flagship Inn and Suites
8.4 out of 10, Very Good, (1062)
The price is $125
includes taxes & fees
$115 per night
Mar 31 - Apr 1

Fishermans Wharf Inn
Fishermans Wharf Inn
8.6 out of 10, Excellent, (734)
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Find out more about Boothbay Harbor
Find out more about Boothbay Harbor
Independent Boothbay Harbor Hotel Guide
Some globe-trotters choose hotels based on location, but others book by name. And thanks to Expedia you don’t have to pick. It is why we offer such an expansive range of Independent hotels in Boothbay Harbor, Maine. Known for well-appointed rooms and friendly, personalized service, each of the top Independent Boothbay Harbor hotels guarantees an unparalleled level of comfort and quality.
You’ll find best-in-class amenities like clean rooms and quiet atmospheres, and some Boothbay Harbor Independent locations may even offer extra little benefits and discounts for frequent travelers.
Recent reviews of Boothbay Harbor hotels
Recent reviews of Boothbay Harbor hotels

Flagship Inn and Suites
5/5 Excellent
"What a great place for me and my family to stay, including our pet."
A verified traveler stayed at Flagship Inn and Suites
Posted 3 weeks ago
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Lodging
- Hotels near Boothbay Harbor Memorial Library
- Hotels near Boothbay Harbor Marina
- Hotels near Burnt Island Living Lighthouse
- Hotels near Opera House at Boothbay Harbor
- Hotels near Boothbay Region Historical Society Museum
- Hotels near Boothbay Region Land Trust
- Hotels near Fisherman's Memorial Park
- Hotels near Barrett Park
- Hotels near Carousel Music Theater
- Hotels near Maine State Aquarium
- Hilton Hotels in Boothbay
- Hotels near Cabbage Island
- Hotels near Boothbay Farmers' Market
- Boothbay Hotels
- Cabin Rentals in Boothbay
- Luxury Hotels in Boothbay
- Extended Stay Hotels in Boothbay
- Motels in Boothbay
- Hotels with Free Parking in Boothbay
- 4 Star Hotels in Boothbay
- Houseboats in Boothbay
- Condo Rentals in Boothbay
- Cottages in Boothbay
- Vacation Homes in Boothbay
- Resorts in Boothbay
- B&B in Boothbay
- Cheap Hotels in Boothbay
- Historic Hotels in Boothbay
- Lodges in Boothbay
- Southport Hotels
- Romantic Hotels in Southport
- Condo Rentals in Southport
- Apartments in Southport
- Pet-friendly Hotels in Southport
- Hotel Wedding Venues Hotels in Southport
- Historic Hotels in Southport
- Motels in Southport
- B&B in Southport
- Cottages in Southport
- Luxury Hotels in Southport
- Guest Houses in Southport
- Hotels with Restaurants in Southport
- Hotels with Free Breakfast in Southport
- Cabin Rentals in Southport
- Resorts & Hotels with Spas in Southport
- Hotels near Boothbay Golf Course
- West Boothbay Harbor Hotels
- Hotels near Coastal Maine Botanical Gardens
- East Boothbay Hotels
- Cottages in East Boothbay
- Extended Stay Hotels in East Boothbay
- Resorts in East Boothbay
- B&B in East Boothbay
- Beach Hotels in East Boothbay
- Hotels with Fireplaces in East Boothbay
- Motels in East Boothbay
- Cabin Rentals in East Boothbay
- Apartments in East Boothbay
- Hotels with Laundry Facilities in East Boothbay
- Cabin Rentals in Squirrel Island
- Squirrel Island Hotels
- 4 Star Hotels in Squirrel Island
- Cottages in Squirrel Island
- Vacation Homes in Squirrel Island
- Boothbay Vacation Rentals
- Southport Vacation Rentals
- East Boothbay Vacation Rentals
- Squirrel Island Vacation Rentals
Packages
- Boothbay Harbor Marina
- Burnt Island Living Lighthouse
- Opera House at Boothbay Harbor
- Boothbay Region Historical Society Museum
- Boothbay Region Land Trust
- Fisherman's Memorial Park
- Barrett Park
- Carousel Music Theater
- Maine State Aquarium
- Cabbage Island
- Juniper Point
- Visit Southport
- Visit Boothbay
- Boothbay Vacations
- Visit East Boothbay
- Coastal Maine Botanical Gardens
- East Boothbay Vacations
- Visit Squirrel Island
- Squirrel Island Vacations
Cars
- Car rentals near Maine State Aquarium
- Car rentals near Bayville
- Avis Rental Cars in Boothbay
- Hertz Rental Cars in Boothbay
- Car rentals near Boothbay
- Car rentals near Southport
- Car rentals near West Boothbay Harbor
- Pickup Car Rentals near Coastal Maine Botanical Gardens
- Car rentals near East Boothbay
- Car rentals near Squirrel Island